NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000074

Scaffold Ga0272429_1000074


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000074 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)278183
Total Scaffold Genes210 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (56.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007459Metagenome350Y
F010658Metagenome300Y
F020636Metagenome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000074140F020636N/AMFRRDLKNNLKNEIMRDGKFISDMFDFIEVVIDFDNKLYKRVMKK
Ga0272429_1000074163F007459N/AMYLSCSAVNFSLHAIICKYLISLLIIISIKSYFSSVAKFVDLGNLMMKFIVTSFHNNSDN
Ga0272429_1000074164F010658N/AMIDSNAIDNFMIKALVKKKNYFTQKKSDAYNLIIVDGNSLFDENEKVNKETKSLLIAI
Ga0272429_1000074167F007459N/AMYSSCSTMNFSLHAIICEYLISLSIIISIELYFSLIAKFVDLSNLIIKFIVTLSYNDLSN
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