NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000088

Scaffold Ga0272429_1000088


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000088 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)248740
Total Scaffold Genes275 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)159 (57.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017767Metagenome238Y
F017941Metagenome237Y
F036036Metagenome170Y
F044226Metagenome154Y
F048019Metagenome148Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000088251F048019N/AVNEHVFKLFFAQVFAKALQDESTVYAFIMINVVKKLIVEHQVKAMNNVMNCIINTLKTQTLFIELKKYKDIFLIESADKLSLHEDHNHAIEITAKSSYESLYNLLNTELAILKQYLNDVLVKE
Ga0272429_1000088253F102179GGAVINEVEKISVHSVSKNMNTCSAMHVRSMLLRIMILAVQEMHLDEVHFLRSKISQLESTTLKSTDVETSIHRDRNVAEKQLNSVVETVDCKQFISHAIVRVLTIHETIYNFSNKFVVELIKILQQEDEFAVRLKADKMMSIQKSDVKA
Ga0272429_1000088262F017767N/AMKDVLISSMMSMSDDSFTFESLIIECVLSSNEISYSLKSLINIEAADYSFIDKVITQIVCDQLQIKSLTLIKAKSI
Ga0272429_1000088267F017941N/AMKIADLKKNINESIYKQILETNEIDENCMLLCEAIARNKIQYEDIKLKNC
Ga0272429_1000088269F036036N/AMLVSLIHHLFSYFDQSFMSEDQCLVYLFRYILDLINLQAFASAFILDDVRIEAHMRIKALVYEEENQEDD
Ga0272429_1000088274F044226N/AMKFSDNFNIFSITSMILFYFNKEFHSRMSFNSDMTNYKTTCERLEARKANDIVI
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