Scaffold Ga0272429

Basic Information
Taxon OID	3300031449 Open in IMG/M
Scaffold ID	Ga0272429_1000093 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031449 Open in IMG/M

Scaffold ID

Ga0272429_1000093 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	242506
Total Scaffold Genes	266 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (27.44%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (13.33%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

242506

Total Scaffold Genes

266 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (27.44%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (13.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.7	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.7

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F038009	Metagenome	166	Y
F048018	Metagenome	148	Y
F061399	Metagenome	131	Y
F074204	Metagenome	119	Y
F076668	Metagenome	117	Y
F083460	Metagenome	112	Y
F086375	Metagenome	110	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_10000931	F001951	N/A	MMKLKFIDLLRNERERDEDTVETTVTKMMIFELKELLINAEMLLTLINET
Ga0272429_100009314	F020121	N/A	MLIAQIIYEFNVNLSRCSCFKYFVEDKVXLNACNLSIACLVVKLDDHNIDFFKIKHVFKNNSLIIELNFSTFIKIHSIFHVILLNHITSDFLSSQHQKSQELIVIKNDERFXYVNNILNFKHNKCYNSSLLKYYINXKDHFSTXKSFHLLYNCEQTLNEYHLINSVVEESHVQSCVISQY
Ga0272429_100009317	F048018	GAG	MIQRRSLSELSTYFLSXKYRXFSCSSYLTKEILLXCCASLQSALIIXAANLSLISTCFYNVXVKISAESSSRFRMSXSSXDLTSSTSNSLIFKFMKTRICKSAEIIENRCNXTESRTMICDXSFMTLMLKMSRARFSTILRSKTXVFRIVXYXYXCQESNVFLSLKRSSEXCVRAFNLSSILSKX
Ga0272429_10000932	F009580	N/A	MKRLRLVDKIICIQISKRDLAQKLNFFREQRDFFIYIYDITVINIHDMQSEKLLIXAFFSDFAXMLQLAVVAQLSLVADFLDLKNDQSLILNDDNDET
Ga0272429_100009323	F001951	N/A	MLEMIKVLSXTMTMTKLRFINSSRDEKERDEDTVKTTVTEIIIFELKELLINAEMFLTLINETMMKTKQY
Ga0272429_1000093236	F008735	N/A	MKEIMIVIHVHALYQTLLSCIQLIFVFLILKYVKKLLEFKRNEDNDRICKKVNNEERLIVQDLCNDLSYHRKKLRIQLYINXRTENDKQEQSDNIMLSNLILKLLHCTKDLNXIFDHTLSELFNSTLIINQEIVRXLYLSERITRRDFNVXKRCRKNKSFVMSETELN
Ga0272429_1000093238	F009580	AGCAG	MIEVRVKRLRLVDKMICIQISEHDLAQKLNFFCKQRNFFIYIDDITVINIHDMQSEELFIXAFFSNFAXMLQLAVIVQLLLVANFLDFRNDQNLILNDDNDEA
Ga0272429_100009325	F094625	N/A	MKLSHNLLIDDEHAVEQFTQSMIENSVKIFHAMHELQNQVRQYDVIISFSFIIFSSSIYIELNSQSLATIAQIIAQILNNQFSFVVHLFVNSVAVFIASRFKKLLNIFEYERNKDXLNAXKQNLIQRMNINDDHYFFHXVKIIYVESXLIIDKKTHNSMNQYRVNDLCIIFIFTDX
Ga0272429_10000933	F074204	N/A	MIIFCILHQAQSKVFILALIDNEVFTYVFMNKFFMQQHHFFLHQLIHSCRLQEFNDQVALTDDITYVVEITIILNEHIKRLFFYVIELSQYFIIISLS
Ga0272429_100009331	F086375	N/A	MFTLFVNSKSIASRNRGENWFNEIKEHYKRQNNDHVIIFKXLHKLRQFNVLKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ
Ga0272429_100009334	F076668	N/A	MTCLLLTSSFLACASARKTSKSLMHSTDHYAIKETSVFKSTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRSQKISFSKXSSKDXLKRLCMIMLERTCYNMIFAFSTLSXVLFKKLLKTLCASLXKVSALLFCIITFVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSIK
Ga0272429_10000935	F038009	N/A	MSSMIKTLNFQLNYVKLYKRLIELICLKNNRSFKKKKILTLNFXXVFFLNDLKNTTRSFLFQMRNKTEXDLFLVNELNINXLFMSKRKIILLLVSRXETKLLFASELRIKLLLVSELKTELLLSSKXKTRLLLTSELKTELLLLNEXKTKLLFASELSAELLLVSNL
Ga0272429_100009355	F010214	N/A	MXCLSKLLMKVSVLFDYDTSSLLCSSLMIFYTTMFXFNSXFKDERCFLCIHDAHDCNICRAAFSYSMIVIHXAEKYVMKERCTXXEDKVXLYXVILFFFXFNLCYINVELIVSINVQSQSFDVXLXSMKENAFXLFSXALNFSHE
Ga0272429_100009363	F083460	N/A	MXLXIKSSDSQAYSDALFELNASSIEYATRHRLHELSNHRLNHEESQDNSENDDENEAAEAV
Ga0272429_10000938	F061399	N/A	MNITYKYVLIFIDHFIKMKHIVLITFMKVKEVINCFYVHVXKHHDLLEFFMSNQDTQFIFDVXKHMCKMLKINVKLLMMYHSEINDQIKKVNAVIKHYLQVFINYMQNDXIKXLSEIEFIINNASLSITLTSFFLINLNQNLCLDFKFSESLLENLTSQAPNKLINVKEFIKKMKKLTEHLRNKMLIAQIIYKFNVNLFHHSCFKYFIKDEVXLNACNLSIAHLTVKLNDHNVDFFKIKHVFKNNFLIIELNFSAFMKIQSIFHVILLNHITSDFLSNQRQKSXKLIIINNDERFXYVNSILNFKHDRCYNSFLLKYYIDXKDHFST

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272429_1000093

Overview

Ecosystem & Geography

Associated Families

Sequences