Scaffold Ga0272429

Basic Information
Taxon OID	3300031449 Open in IMG/M
Scaffold ID	Ga0272429_1000095 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	239483
Total Scaffold Genes	272 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	75 (27.57%)
Novel Protein Genes	20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (20.00%)
Associated Families	16

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.7	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F009580	Metagenome	315	Y
F021216	Metagenome	219	Y
F035571	Metagenome	171	Y
F038009	Metagenome	166	Y
F038484	Metagenome	165	Y
F041516	Metagenome	159	Y
F058565	Metagenome	134	Y
F064254	Metagenome	128	Y
F086377	Metagenome	110	Y
F087979	Metagenome	109	Y
F094622	Metagenome	105	Y
F096306	Metagenome	104	Y
F102180	Metagenome	101	Y
F102181	Metagenome	101	Y
F104134	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_10000951	F102180	AGTAG	MMIAMKINXELNKRLRKLTLIITHHEELKELIARVKHLTDVATENQKYYEKIYQVYSDSQTSLKTVEAMISTKDQTRLQXVQIAHESI
Ga0272429_1000095108	F041516	N/A	MIQKAIHIHEAYNLSLKDHKVIHEKESLSDIKKMLHMLRECILVENFNLHHFT
Ga0272429_1000095111	F102180	GAG	MMTAMKFNXKLNKRLKELTLIITHHEELKELIAKMIHFTNVMTENQECHEKIYKVYNDNQTSLKTVKAMISTKDQTRLQQVQIIHESI
Ga0272429_1000095120	F035571	N/A	MSNQEIMXITFVKQTHISLHACLISCVQSLTXLCSMILFYNMFKXTCNELVYVSVSKVSMLTLLNASATXCRVXFXSVSSLHSLLNSSSFLSRXCQTDASNAISDLTTAEYTCFAFVKIAFYVKTSRXLSVNIFVTXFISIYXRCASFCSFMFSCIFRTCMSDFNLITELFIYMLIIMLNFFDFLVKCINSYFSDANVASXVXAHFAQTSCALLSVLQISSVNLL
Ga0272429_100009513	F102181	N/A	MSVESSKNLKKKFIIHVHALYQTLLSCIQSIFVLLIFKYVEKFLEFKSNENNVKICKKMNDEERLIVQDLCNDLSYHCKRLRIQLYINXKIENDE
Ga0272429_1000095136	F064254	N/A	MIIVVALMIFKSFLKFMMFSSHCIAFHSTFHLKHVNKMYLINIXSLLHLHVIIMTSSTHLLCRNXLKSIFLMHSCVNNALXNFAXFLCSCRYRCVIFDVRYQKXTLLNFSFQTILYVYLICFCMSVSFIITSICXCSVNDRNKSCASLIILFITLFSSTSACLII
Ga0272429_1000095139	F086377	N/A	MIQHFXDQKQRILILDCDSIQISIVHAEVKFFFKFLDEENKDDHLKVTDSNEIFAQIFIQITLKF
Ga0272429_1000095147	F104134	N/A	MSSLLSLQSEMIRFLXSVDTSAIFCKICLIDFFCIFSISLLFIILIMTSHFLRSDDKLSLRRYFLVAISSLVMFAHDVIFVERRVLLCIFNCLFSSXTDVFSFCTFFAMNTFXFTXCFSSESSXRRXISFNAISFHEXSLLFSFFNVDIFISKLIMLAMFSSSLCKHFNLAFLFSCDKSMSLAIIFESTLLQFMQFIIVQSSFKFTLSCL
Ga0272429_1000095148	F087979	N/A	VKEKNENSTSIYMNXAESRLDSSFIDLRFQKFMHMIEMIETELLRLN
Ga0272429_1000095150	F086377	N/A	MIQRFXDQRQRISILDCNSVQISIVHAETKFFFEFLDEENKDDHLKVIDLNEIFAQIFIQITTKF
Ga0272429_1000095153	F038009	N/A	MSSMIKALNFQLNYVKLYKRLIELICLKDNRSSKEKRISTLDFXXVFFLNDLKNMIKSFLFQTRDKTEXSLFLVNKLNISXLLISKRRVILLFVSKRETELLLVSELKTELLLVSELKTELLLSSKXETRLLLASELKTKLLLSSKXETRLLLASELKTKLLLSSEXETRLLLASELSAELLLVNNL
Ga0272429_1000095157	F009580	AGCAG	MIEVRVKRLRLVDKIICIQIFERNLVQKLNFSCRQQDFFIYTDDITVINVHDMQSEELFIXAFFSDFAXMLQLAVVAQLSLVADFLNFRNDQSLILNNDNDEA
Ga0272429_1000095183	F041516	N/A	MIQKVIHIHKAYNSSLKDHEVIHEKESFSDIKKTLYMLRKCILVEDFNLHHLT
Ga0272429_1000095192	F096306	N/A	MYNNYAVDSLIIDDDSNDERSCKDNSELHASMILFNIMILIVTNVKIIFVESNDK
Ga0272429_10000957	F104134	N/A	MIRSLXSVNTSAILCKICSINFFCIFFISLLFIILIMTFHFLQSNDRSSLSHYSFIAISSLVMFAHDVIFVKRCMLFCVCNCLLNSXTDVFSFCTFFAMITFXFTLCFSSELSXRHXISFNAISFHEXSLLFFFSNVDIFISKSIMLTMFFLLLREHFNLASLFLCNESMSLAIIFESTLLXFMQFIIVQSSSKFTLSYL
Ga0272429_100009572	F021216	N/A	MFQMKSRMKSNVMKREHHELEKAFRNHERSDNDHSNDTFNEHTESISSCDVIKELDEREK
Ga0272429_100009573	F094622	N/A	MLINQHHFDIFTLKQRVYLNDNNSRKNVMMITMKINXELNKRLKKSTLIITHHEELKELIAKMKHFADVATENQEYHEKIYKVYNDNQTFLKAVKVMISIKDQTHLQXIQIAHESI
Ga0272429_10000958	F001951	N/A	MMIIMKLKFINSSKDENEKNEKIVKMTVTKMIFKFKKLLINVKMLLTLMNEMMIKMK
Ga0272429_100009592	F058565	AGGA	MIASDVNSSQENRDARLKCLRNDEENIANIIDLQIKISTLEKEKSKDHSXKEIALKLI
Ga0272429_100009598	F038484	N/A	MRMLSAFXKSSHIFIILLLRCNLCAENALTFVTHSLYFSHCXFHXSLXYCAIVMLSLVEIIVKKRMHHLHLNCIFTSSXMKTFRSIIFLMMSNXEMTXITFVKRTCINLHACLIFCIRSSIQLCSMILFCNMFKXTYNELVYVSVFKVSMLTLLNASATXCKVXFXIVSNLHSLLNSSSFLSRXCQIDALNAISDLIIVEYTCLAFVKIASHVKTSKXLSVSILVMXFIFICRRCVSHYSFMFSCIFRICTSDFNLITELSIYMLVIMSNLFNFLVKCVSSYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272429_1000095

Overview

Ecosystem & Geography

Associated Families

Sequences