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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000106 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 222432 |
| Total Scaffold Genes | 292 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 149 (51.03%) |
| Novel Protein Genes | 15 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F005901 | Metagenome | 386 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F021452 | Metagenome | 218 | Y |
| F036036 | Metagenome | 170 | Y |
| F058565 | Metagenome | 134 | Y |
| F059497 | Metagenome | 133 | Y |
| F061402 | Metagenome | 131 | Y |
| F079402 | Metagenome | 115 | Y |
| F098340 | Metagenome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000106100 | F003820 | N/A | MNDLQNKINNRLQNALSICSKNFTLLTHLRIFLQDVNSKQRVNYQLRSERCTVIVKVTVVPDKCATSLSITTSIIDYVKSTISFIFESARSSIICYICKILDHLFKNCSQLNKINTSASHAFISHLHKIIISKNKENEKMSFKNSEAKN |
| Ga0272429_1000106110 | F008668 | N/A | MSFDSDTTDYETTCERLKARKADDIVIQMKKLLNFDHQQLKKTKLIIEVQINKHK |
| Ga0272429_1000106115 | F006206 | N/A | LLQFQFEFRLKKLVISSKVIKKIEIISLCKLDEILLKENYFEKLFLIDIHLISQNQSFNLRSLINSDSIIYMIIHSNLVDKVCKKLRIQFISLTKEKLIRNYDEKISKKIITHKILFNLIIESHKKLTVLMLIVDINHHEVILSKL |
| Ga0272429_100010636 | F058565 | AGAAG | MNCTNRSSAGSKTIASDVDSSQGNRDAESKCSRNDEENVANIIDLLIKISTLEKEKSKDH |
| Ga0272429_100010643 | F005901 | N/A | LIYELFDHLKEIYDELNKNQKSRREYNALKQADKSFNIFYFNFMKLFSYLDYDDRILMNDFQNKINNRLQNVLSVCSENFTSLSRIKKFLQDVNNKQRVNYQLRSERCTVIVKVIVVPDKCATSLSVMTSIINYVRSTIFSISESARSSIICYICKISNHLFKNCSQNKIDISTS |
| Ga0272429_100010644 | F000597 | GAGG | VIFIKDAMKDVLISSIMSMSNDFFASESLTTECVLSSNEISYLLKLLIDTEAADYSFINEVIAQIVCDQLQIKSLTLIKAKSIREFDNHYAKKLITHVIYSNLMIQDHTVNIASMLITQLEQHQMILGKT |
| Ga0272429_100010653 | F036036 | N/A | MTRFMLISNIIDLLSMLVNLIYHLFSCFDQSFMSEDQCFVYLFRYILDSINLQAFANAFILDDVRVEAHMRMKALVHEEEDQEDD |
| Ga0272429_100010654 | F013598 | N/A | MNFIINLFDSYDYNTILTVICKLLKERHYISCIIDDEDITVEKTAEILLQ |
| Ga0272429_100010665 | F059497 | GAG | MFIEDIDRKIVYNTQCELDVINVFSVDETIQNLENIKVKLSLKYQNFLDIFDQAQADKLLSHCSYDHKIKLTSDVTSSRCQAY |
| Ga0272429_100010668 | F021452 | N/A | MPDDSFDFKSFTVDVILSSLKKIFRSFALIDIEVTDITFIDESLISKLCERFNIQSILLSKSKLIQLYDEISDQKSITHALYTLIMIQEHKNEMMFLLITCLDQHKIIIENL |
| Ga0272429_100010669 | F098340 | AGAAG | MIEVAVYQTLVKNKKIKIFSLIISEINKALSSVEDFAKLNEMTSVMSLNELKKKLSIIYHDFLNVFDREKTTQLLLHRSYDYKIELKDEGQSFKS |
| Ga0272429_100010674 | F061402 | N/A | MTKFVDNNAMSLSIEQSAFFLNKSFHSRMSFDLNSTEYEIIQARIEASKAKNIFEQMK |
| Ga0272429_100010678 | F079402 | N/A | MRNKLKINKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNMITNSFLEAEEILSIINKMYDDFNQHYTTQRQFLKLY |
| Ga0272429_100010679 | F021452 | N/A | MSDDLFDFKSFTVDIILSSLEKIFRSFALINTEVIDMTFIDESLMSELCERFDIQSISLSKSKSIQSYDEISDRKSITHALYTSIMIQEHKNEMMSLLITCLDQHKIIIENL |
| Ga0272429_100010686 | F061402 | N/A | MTEFVDNNAILSSIEQSAFFLNKSFHSHMSFDSNSTEYEITQARIQASKAENIFEHMK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |