NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000107

Scaffold Ga0272429_1000107


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000107 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)222272
Total Scaffold Genes273 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)170 (62.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F021896Metagenome216Y
F038010Metagenome166N
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10001071F021896N/AMKNNLESEDFLKNVECNLIFLKSDKEYIFSDETSERDSYSTIVIDKSSIKVREI
Ga0272429_100010716F021216N/AMSQMKSRMKSNAMRKEHHELEKAFRNHERNDDDHSNDTLNEHTESISSCDIIEELNEREK
Ga0272429_100010721F071806N/AMKLQSQIITLDSVQLHLFSITSALLQILAFMNLKIEEFNVEDVKSQLDQNILNLDKDFADILTQTL
Ga0272429_100010723F021896N/AMIKNNLESEDFLKNVECNLTFLKSDKEYIFSDEMNERDSYSTIVIDESFIKVHEI
Ga0272429_100010782F038010N/AMNNDHLVLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHFLLCFSLSEICTLQRFDDQSVVFDSITHYALVKLRVSSEKLEETLFYVTQLSQFSVVLDLF
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