NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000113

Scaffold Ga0272429_1000113


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000113 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)218417
Total Scaffold Genes256 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)144 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F021452Metagenome218Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000113168F036036N/AMLVSLIHHLFSCFDQSFTSEDQCFVHLFRYILDSIDLQAFANAFIFNDVKIKAHMRMKVLVHEEENQEND
Ga0272429_1000113175F000597N/AMKDVLISSTTSMSDDFFASESLIIECVLSSNKISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIKLLTLIKAKSIREFNDHYAKKLITHVIYLNLTIQDHTINIASMLIT
Ga0272429_1000113236F021452GAGMLIFCFINMFDDSFDFKSFIMNIILSSLEKIFRFLALINIEVTDMMFINDSLISELCECFDIQSISLFKSKTIRSYDKIFNRRSITHALYISVTIQEHKNEMMSLLITRLDQHKIIIDNF
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