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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000115 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 214779 |
| Total Scaffold Genes | 246 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 140 (56.91%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F021896 | Metagenome | 216 | Y |
| F025887 | Metagenome | 199 | Y |
| F040408 | Metagenome | 161 | Y |
| F048019 | Metagenome | 148 | Y |
| F055319 | Metagenome | 138 | Y |
| F087980 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100011538 | F040408 | N/A | MYDYESIFDIHIKNDAMKEEMSAAKEHVEMLKDVQNTLTQ |
| Ga0272429_100011544 | F048019 | N/A | VNEHAFELFFAQVFVKALQDEFTVYIFVMINIVEKSIIEHQVKTMNNMMSCITNTLKTQILLVELKEYEDVFLTESADKLSLHENHDYAIEITAKSSYESLYNLSNIKLTTLKQYLNDILVKE |
| Ga0272429_100011548 | F025887 | N/A | MSDDSFNFKSFIVDVILNSLRKIFKFLTLINIKVIDMTFTNESLMSELCECFDI |
| Ga0272429_100011549 | F087980 | N/A | MIENSVEIFHVMQELQNQVQQHNVIISSLFIIFSSSVYIELNSQSFTTIAQIIQQILNNQSFLVVHLSANFVAVFIASKFKKLLDISKYERNKD |
| Ga0272429_100011552 | F001951 | N/A | MMIMMKFKFINSLRNKKERDEDTVEITVTEMMIFEFKELLVDAKMFLTLMNEIMMKMK |
| Ga0272429_100011553 | F055319 | AGCAG | MTEVRVKRLRLVDKMICIQISERNLAQKLNFSCKQRDFFIYTDNITVINVHDMQSEELLI |
| Ga0272429_100011556 | F021896 | N/A | MTKNNLESEDFFKNVECNLTFLKSDKEYIFSDETSERDSYSTIVINKSFIEVCEI |
| Ga0272429_100011567 | F048019 | N/A | VNKHAFKLFFAQVFAKALQDEFTVYVLVMINIVEKSIIEHQVKTMNNMMSCITNILKTQILLIELKEYEDVFLTESADKLFLHEDHDYAIEITAESSYESLYNLSNTELTTLRQYLNNILVKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |