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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000116 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 213903 |
| Total Scaffold Genes | 283 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 148 (52.30%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F013598 | Metagenome | 269 | Y |
| F021896 | Metagenome | 216 | Y |
| F032102 | Metagenome | 180 | Y |
| F074204 | Metagenome | 119 | Y |
| F087979 | Metagenome | 109 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000116100 | F013598 | N/A | MNFIINLSDSSEYNAILTIICRLLKKRHYISCIIDDEDITVKKTAEMLIQ |
| Ga0272429_1000116101 | F032102 | N/A | MKIADLKKNINESIYKQILKTNEIDENCTLLREAIARDETQCEDIKLKNCRVQNEILYHDNQL |
| Ga0272429_1000116106 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIICDQLQIEFLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHIIDTAFMLITQLD |
| Ga0272429_1000116107 | F003820 | N/A | MKLFSYLEYDNHILMNDLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVSDKCATSLSITTLIINYVKSTIFSISESARSSIICYICNIFDHMFKNCFQLNKIDTSASCAFTSRLHEIIISKNKENEKMSFENNEAKN |
| Ga0272429_1000116108 | F087979 | N/A | MKEKNESSTFIYMNQAKSRLNNSFIDLRLQKFMHMTEMIKTKFLKLN |
| Ga0272429_1000116202 | F003820 | N/A | MKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSKNFTFLSRLKKFLQDVNNKQRVNYQLRSERCTVIIKVTVVSDKCATLLSMITLIINYVKLTIFFISESARLSIICYICKTSSHLFKNCSQLNKIDTSAS |
| Ga0272429_1000116203 | F000597 | GAGG | VTFIKDAIKDVLISSTTSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDKVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDIASMLITRL |
| Ga0272429_1000116209 | F013598 | N/A | MNFIINLSDSSEYNAILTIICRLLKKKHYISCITDDEDITVEKTAEMLIQ |
| Ga0272429_100011692 | F021896 | N/A | VTKNNLESEDFLKNVECNLTFLKSDKEYIFSDKMSERNSYSTIVIDESFIEVREI |
| Ga0272429_100011695 | F074204 | N/A | MIVFCILHQAQSRVFILILIDSEIFAYVFMNKFFTQQHHLLLYQLTHSCRLQEFDDQVTLINDIIHVVKITMILNEHIEKLFFYVIELSQYFIIMSLS |
| Ga0272429_100011696 | F102181 | N/A | MKKIMIIIHVHALYQTLLSCIQSIFVFLIFKYVEKLLESRSDEDNDRVHKEVNNKKRLIIQNLCNNLSYHHKRLRIQLYIN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |