NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1000130

Scaffold Ga0272429_1000130


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000130 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)205085
Total Scaffold Genes187 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (42.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021452Metagenome218Y
F048019Metagenome148Y
F061402Metagenome131Y
F065269Metagenome127Y
F079402Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000130137F001951N/AMTMTKLKFIDSSRDKRERDEDIVETTVTEVMIFELKELLVDAKTFLTLINEMMIKMK
Ga0272429_1000130141F048019N/AVNEHAFKLFFAQVFAKALQDKLTVYALVMINIIKESIIEHQVKVMNNMTNCITNTLEMQTLLVELKEYEDVFLTKSADKLSLHEDHDHAIEIIAESSYELLYNLSNTELVTLRQYLDDVLAKE
Ga0272429_1000130146F021452N/AMLDDSFDFKSFIVNVILSSLKKIFRFLALIDIKVTDMTFIDDSLISELCERFDIQSISLFKSKSIRSYDKIFDRRSITYALYISVTIQEHKNEMMFLSITHLNQHKIIIDNL
Ga0272429_1000130147F079402N/AMQNKLKMNKNHFSIEEMKIAYVKSRVSETTIKHIALRMRNTITNSFLKAEEILSIINKMYDDPNQHHTTQRQFLKLYQNKIFFHKF
Ga0272429_1000130148F065269N/AMTRSTESESVSIARYELQNARRKSLLSQNRTASEEENMNASSNIEEENMNALLFDHEMIKISISIELNA
Ga0272429_1000130175F061402N/AMTKFVDNNAISSLIEQSAFFLNKSFHSRMSFDSNSTEYEIIRARIEASKAKNIFEHMK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.