NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000146

Scaffold Ga0272429_1000146


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000146 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)189581
Total Scaffold Genes231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)122 (52.81%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F071806Metagenome121Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000146107F001951N/AMMTMTKLRFIDSSRNEKERDEDTVETTVTEVMIFELKELLVDAEMFLTLTSETMMKTK
Ga0272429_1000146108F055319AGCAGMIEVRMKRLRLVDKMICIQIFERDLAQRLDFFREQRDFFIYIDDVIVVDVHDTQSEELLI
Ga0272429_1000146109F074204N/AMIVFCILRQAQSRVLVLALIDSEVSAYVFMNKFFAQQHHLLLHQLTHSRRLQEFDDQVALIDDITYVVKITMILDEHIERLFFYVTELSQYFIVMSLS
Ga0272429_1000146113F021896N/AVTKNNLESEDFLKNVECNLTFLRSDKEYIFSDETSERDSYSTIVIDESSIEVREI
Ga0272429_1000146117F071806N/AMKLQSQIIALNSVQLHLFSIISAFSQILALMNLEIEEFDVEDIKSQLNQDTLNLDEDSADTLTQTL
Ga0272429_1000146118F021896N/AVTKNNLESENFLKNVECNLTFLRSDKEYIFSDEMSERDSYSTIVIDESSIEVREI
Ga0272429_1000146121F074204N/AMIVFCILRQAQSKVLTLALIDSEVSAYVFMNKFFAQQHHLFLHQLIHSRRLREFDDQVALIDDIIHVVEITMILDEHIERLFFYVTELSQYFIVMSLS
Ga0272429_1000146122F055319AGCAGMIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYIDDVTVVDVHDMQSEELLI
Ga0272429_1000146123F001951N/AMIMTKLRFIDSSRNERERDEDTVETTVTEVIIFEFKELLVDAEMLLTLTNEMMMKMKQD
Ga0272429_1000146125F087980N/AMKSSHNLSIDDERAVEQFAQSMIENSVEIFRAMRELQNQVRQHDVIISFSFIILNSSVYIELNSQSLATIAQIVAQILNNQSLFIVHFSANSVAVFIASRFKKLLDISEYERNKDRLNA
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