NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000151

Scaffold Ga0272429_1000151


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000151 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)180507
Total Scaffold Genes223 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (53.81%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F025887Metagenome199Y
F032102Metagenome180Y
F041516Metagenome159Y
F065269Metagenome127Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000151200F025887N/AMSDDSFNFKSFTVDVILSSLEKIFRFLALIDTEVIDMTFINESLMSKLCEHFNIQSILLSKLKLIQMYDEIFD
Ga0272429_1000151202F008668N/AMILFYFNKEFHSRISFDSNTTDYETTCERLEARKADDIVIRMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDD
Ga0272429_1000151208F032102N/AMKIADLKKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDNQL
Ga0272429_1000151214F081945N/AMSSHSLTEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAEMIILFVFYEI
Ga0272429_1000151216F041516N/AMIQKVIHIHEAYNSSLRNYEIIHEKENLSDIEKMLHMSKESILVEDFNLHHFT
Ga0272429_1000151221F065269N/AMTRSSKSASIAHYKLQNARRESLLLQNQTASEEEDMNASLNTEEENMNALLFNHEMIKISISTELNA
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