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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000158 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 176528 |
| Total Scaffold Genes | 242 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 133 (54.96%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F003820 | Metagenome | 466 | Y |
| F006206 | Metagenome | 378 | Y |
| F013598 | Metagenome | 269 | Y |
| F017767 | Metagenome | 238 | Y |
| F032102 | Metagenome | 180 | Y |
| F048019 | Metagenome | 148 | Y |
| F061401 | Metagenome | 131 | Y |
| F102179 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000158116 | F017767 | GAG | VTFIKDAMKDVLISSMMSMLNEFFVSESLIIECVLSSNEIDYLLKSLIDIEAADYSFIDKVIT |
| Ga0272429_1000158119 | F048019 | N/A | VNEHAFELFFTQAFAKALQDESIVYALVTINVVKESIIEHQVKAINNVMSCITNVLKTQTLLIKLKEYKNVFLTENVDKLLLHENHDHAIEITAESSYESLYNLLNTELATLKQYLNDVLVKE |
| Ga0272429_1000158120 | F003820 | N/A | MKLFSYLNYDDCTLMNDLQNKINNCLQNALSICSENFTSLLRLKKFLQDVNNKQRVNYQLRSERHTVIIKVTVVSDKCTTLLLMMTSIINYVKSTIFSIFKSARSSIICYICKTSNHLFKNCSQNKIDISTS |
| Ga0272429_1000158121 | F000597 | N/A | VTFIKDVIKDVLISLMMSMSDDSFASESLIIKYVLSSNEINYSLKSLIDIEAAEYSFINEVIAQIVYDQLQIKSLTLIKAKSIREFNDYYAKKLITYVIYLNLTVQDHMIDIASMLIIQLNQHQMILEKT |
| Ga0272429_1000158125 | F013598 | N/A | MNFIIDLSDLYDYNAILTVICKLSKERHYISYIIDDKDITVEKTAEMLIQ |
| Ga0272429_1000158130 | F061401 | N/A | LNNDQRVIREIKNKIKRVEDLSKTIFHKATVITQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKEFLDRSTRINAVNKKYDRFDFNSNFDSKN |
| Ga0272429_1000158131 | F006206 | GAG | LCKLDEILLKENYFEKLFLIDAHLISQNQSFSLHSLIDSDSVIYTIIHSNLVNKVCKKLKIQSISLTKEKLIRDYDEIISKKIIIYKILLNLIIESHKKLTVSMLIADIDHHEVILSKL |
| Ga0272429_1000158138 | F006206 | GAG | LCKLDKILLKENYFEKSFLIDAHLISQNQSFSLCSLINSDSVIYMIIHSNLVNKVCEKLKIQSISLTKEKLIRDYDEKISKKVITHKILFNLIIKSHKELTVSMLIADINHYEVILNKL |
| Ga0272429_100015894 | F102179 | N/A | MFVHNVNENTSTCSAVHVKSMLLRIMILAVQETHLDEVHFLRSRISQLESITSKSTDVETLTHKDHNVAEKQLNSVAETVDCKQLVSCAIVRVLTIHEMIYNFSSKFIIEFIKILQQEDEFAVKLRADKMMSI |
| Ga0272429_100015896 | F032102 | N/A | MLNQLKIADLKKNIIESIYKQIFEIDEIDENCTLLHEAIARDETQCEDIKLKNCHVQKRILYHDNQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |