NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000166

Scaffold Ga0272429_1000166


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000166 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)173677
Total Scaffold Genes208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)108 (51.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013598Metagenome269Y
F017767Metagenome238Y
F021896Metagenome216Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100016614F021896N/AMMKNNLESENFLKNVECNLTFLRSDKEYIFSDETSERDSYFTIVIDESSIKVCEI
Ga0272429_1000166182F017767GAGGVTFIKDAMKDVLFSSMMSMSDDSFASESLTIECILSSNEIDYSLKSLIDIKAADYSFIDEVITQIVCD
Ga0272429_1000166186F013598N/AMNFIINLFDSYDHNAILTVICRLLKERHYISCIIDDEDITVEKTAEMLL
Ga0272429_100016619F102181N/AMKEIMIIVHVHALYQILLSCIQSIFVFLIFKYVKKLLEFKSNKDNNRICKEMNDEERLIVQDLCNDLSYHHERLRIQLYIN
Ga0272429_1000166206F017767GAGGVTFIKDTMKDVLISSTTSMSDDSFASESLTIECVLSSNEISYSLKSLIDTEAADYSFIDEVIA
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