NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000187

Scaffold Ga0272429_1000187


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000187 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)160513
Total Scaffold Genes173 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (26.59%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (11.76%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F009580Metagenome315Y
F013598Metagenome269Y
F021026Metagenome220Y
F028667Metagenome190Y
F035571Metagenome171Y
F038009Metagenome166Y
F048019Metagenome148Y
F061399Metagenome131Y
F064254Metagenome128Y
F071806Metagenome121Y
F075493Metagenome118Y
F080690Metagenome114Y
F086377Metagenome110Y
F094624Metagenome105Y
F094625Metagenome105Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000187151F013598N/AMNFIIDLSDSSEYNAILTIICKLSKERHYISCIIDDEDITVEKTAEMLIQ
Ga0272429_1000187153F028667N/AMIRNNLLRSFRKFARDSSNYFHQNTHSNLLKFIKSITQSYHNQIYLSIFISLTMTRDSESVESRTARLLRSTASRRVSLISFDASAKSQNVAISXDINTNQQLRQXAIDQSDEIIKMLIELRDQRDMTLKLNEQXIDLQVDHIKRLDELEINQTTINTQEETIIDLQEKVLSFKKKQRSANHSRSRQSTKSRASIENHTRRESFTLFDNDHHKFFKFSNSSIFTDEDKSTXNSXRIKIDDKLQTNVDHFNNENICIVYVISRLEDDAAEHIFARRRHDASHSYISIDELFEHLKEIYDELNKNXKCRREYNALRQADKSFNVFYFDFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSERHTVIVKVTVVPDKHATSLSVTTSIINYVKSTISSISESARSSIICYICKTFNHLFKNYSQLNKIDTSASHAFISRLHEIIISKNKENEKMSFENSEAKN
Ga0272429_1000187154F094625N/AMKSSHNLLINNERAVKQFTQSVIKNSVEIFRVMRKLQNQVQQHDVIASFLFIVFNSSIYIELNSQFLAMITQIITQILNNQSSFVVHLFANSVIVFIASRFKKLLDISEYEKNKNXLNAXEQSLIQRMNVNNDHYFSHRVKIVYVKSQLIINKKIHNLMSQYRVNDLCIIFIFADXXHKLRHCCNNYFKTEDAHLYLREILK
Ga0272429_1000187157F021026N/AMIVFCILCQAXFKVLALALIDSEVSAYVFMNKFFAQQHHLFLHQLTHSRRLXEFDDQVTLINNIIHVVEITMILNEHIERLFFYVIEFSQYLIIMSLSXLCHHVIDVNFEHNILILSFFFCLNHCCSSLVKIYDLNQQEENFSFEVNKVAFFQSRSQFTHKKQLSSXIAHKKQFNLQIIHKK
Ga0272429_1000187158F038009N/AMSSMIKVLSSQLNYVKLYRRLIELICLKNNRSFKEKRILTLDFXXVFFLNDLKNTTRSFLFQTRDKIERDLFLVNELSISXLLMSKRKIILLLVSRRKTELLLTSELRTELLLVSELKTKLLLSSEXETRLLLVSELNAELLLVSNL
Ga0272429_1000187164F061399N/AMNITYKYVLIFIDHLIKMRHLVLITSIKVEEVINCFYAYVXKHHDLLEFFMFNQDIQFIFNVXKHMCKMLKINIKLLTTYHFEIDDQIKKVNAVMKHYLXVFINYMQNDXAKXLSEVKFIFNNASSSITLASFFLINSSQNSRLDFKSSESLLKNLTSQAXDKLINVKKFIKKMKKLTEHLHDEMLIAQIIYKFNVNLFHHSCFKYFVEDEVXLNVCNLSIVHLAVKLNDRNIDFFKIKRVFKNNSLIIELNLSAFMKIHSIFHVILLNHIASDSLLS
Ga0272429_1000187165F064254N/AMXKLYESVSSLFFLSFIXFFDDITAXNXFSMLIESIIXMIVIAALMISKSFLKFVMFSSHCIAFHSTFHLKHVNKTCLINIXSLSYLHVVIATLNTRLSCKNXLKSIFLVHNCVSNALXNFAXLLCNHRCRCIIFDVRYQKXAALNLSFQTTLHVYLICFCMSINLVITSVH
Ga0272429_1000187169F009377AGAAGLNTEEENMNMLFFDHEMIKISISTELNAXISTHEADDIVVFIKYMCQQHDTEIEIHNDMIQMLEDVNEINITLKITQTRLQKENRNKNVIIHHLEAASSQQSTSISEDXFSKLIKLLNSSLFEDSSQNVNNXLSRMXNKLKANKNHFSIKELKIAYIESRVSEAAIKHIASRMQDIFLNLFLEVEEVLSMINKMYNDLNHHHTTQR
Ga0272429_100018722F048019N/AMNEHAFKLFIAEDFTKVLQDESTMYAFVMINIVEESIVEHQVKVMNNVMSYITNALEMQTLLVELKEYEDVFLTESANKLSLHKDHDHAIKITAKSSYESLYNLSN
Ga0272429_100018725F075493N/AMQSVQAMHEYMLCHLMTLFAVASRVIHVXNISRVQISIQIYAFNSDVHCKNAFCFLKIITHLYHLIAQMQSLCXDCINICDTFSVLFSLLISLIFVILCYCDAITCXNHCEEESASSVSQLYLCIFLNEDIQKYYFLDDEXVRKNAINSRQMSAY
Ga0272429_100018726F035571N/AMSEXERTRLTLVKXAHINLHACLISCVXSLIQLCNVILFCNMFRXTCSKLMYVSVFKVLMFTLLNASATXCRVXFXSISSLHFLLDNSSFLSRXCQTNALNAISDLTTAEYNCLAFVKIASHVKTLRXLSVSILVTXFISICXKCASHCSFVFSCIFRIHMSDFDLITELSIYMLIIMSNLFNFLLKCMNSYFSDANVASXVQAHFAQTSCALLNILQISSVNLS
Ga0272429_100018731F104134N/AMHILDTSSACSCSLIDSSLLRLQSLRXVMNESFRYLLSSXVRLFLELSDLHEISRYFFINLSMIFFXLFMSIIMHTSCVNIAKIRCVTCVELAISFAYIXIFFRFAQASKLTAXREMSLLFSLQSDTIKFFXSVDTFVILCRICSIDFFCISSISLLFIILIMTSHFLQSDDESSLKCCFLVAISSLVTFTHDVIFVKRRVFFCICNCLLSSXIDVFSFYTFFAMNAFXFAXCFSFKSSRRHQINFNAISFHEXSLLFSFSNIDIFINKSIMLAMFSSSSRERFDLASLFSCDESTSLAIIFKSALLQFMQFIVVQSSSRFTLSCL
Ga0272429_100018733F094624N/AMKYYLXIFINYMQNDXAKXLSEVKFIINNTSSLITLTSFFLINLNQNSCLNFKFSEFLLENLMFQAXNKLINVKKFIKKMKKLTEHLHDQMFIAQIIYEFNVNLFCRSCFKYFIEDEVXLNVCNLNITHFTVKLNDHNVNLFKIKRVFKNNFLIIKLNLSAFMKIHLIFYVILLSHIISDFLSNQHQKLQKLIIIKNNERF
Ga0272429_100018744F009580AGCAGMIEVKVKRLRLVDKMICIQISERNLAQRLNFSYEQQDFFIYTDDITVVDVHDMQSEELFIXAFFNDFAXMLQLAIVAQLSLVANFLNLKNNQSFILNNDNDEA
Ga0272429_100018758F071806N/AMKLQLQIITLNSVQLHLSSIISAFLQILTFMNLEIKEFNIENIKSQLNQDTLNLEKDSVDILTQTLXK
Ga0272429_100018760F086377N/AMIQRFXDQRQRISILDCDSVQISIVHAEAKFFFKFLDEENRDNHLKVIDLNEIFAQIFIQIMTKF
Ga0272429_100018765F080690N/AMKSLHNFSINDKHAVKQFTQSVIENSVEIFHVMQELKNQVQQHDVIILFSFIIFSSSIYIKLNSQSFIMIIQIIAQILNNQSSFIIHLFANSVAVIITSRFKKLFDIFKYEKNKNQLNAXKQSLIQRMNMNDDHYFFHXVKIIYVESXFIINKKIHNLMSQYXINDLCIIFIFADXQVXQHKLHHYCDNFFKTEDAYLYLHETLKQDMNNFVDYYNLFYQKK
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Biomedical Sciences Research Center "Alexander Fleming"
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