NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000195

Scaffold Ga0272429_1000195


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000195 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)157648
Total Scaffold Genes162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)87 (53.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F025887Metagenome199Y
F041516Metagenome159Y
F065269Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000195127F025887N/AVTENNILTFCFISMSDDSFDFKSFTVDIILSNLEKIFKFLALINTEVIDMTFIDESLMSELCERFDIQLISLSKSKLI
Ga0272429_1000195130F065269AGAAGVSIAHYELQNARKESLLSQNQTASEEENMNASLNTEEENMNTLLFDHEMIKISISTELNT
Ga0272429_1000195139F021216N/AMSQMKSKMKSNAIRREHHELEKAFRNRERSDDDHSNDTLNEHTELILSCDVIKESDKK
Ga0272429_1000195146F041516N/AMIMLQTLTNDIQMTQKAIHIHEAYNLSFRDHEVIHEKENLSDIEKMLHMLKECILVENFNLYHLT
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