NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000202

Scaffold Ga0272429_1000202


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000202 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153263
Total Scaffold Genes199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)115 (57.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F017941Metagenome237Y
F036036Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000202188F036036N/AMLISLIHHLFSCFDQSFISEDQCLVYLFKYILDLINLQVFASAFILDDVRVATHMRMKVLVHKEENQEND
Ga0272429_1000202189F013598N/AMNFIINLFDSSEYNVILMIICKLLKEKHYISCIIDDEDITVEKTAEMLIQ
Ga0272429_1000202190F017941N/AMKIADLKKNISESIYKQILETNEINENCTLLREAIARDETQYEDIKLKNC
Ga0272429_1000202195F000597N/AMSDDSFASESLTIEYVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYVKNLITHVIYLNLTVQDHTIDTASMLIT
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