NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000212

Scaffold Ga0272429_1000212


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000212 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148190
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (38.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010658Metagenome300Y
F015552Metagenome253Y
F100076Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100021210F015552GGAMTQLTLNAKILDTIKVTSFFANYNKKLNLFEEEQKHLLVQLAIERIATLKKIHNNISKMQKKLIKY
Ga0272429_100021211F010658N/AMIDSSATSNFITKAFVKREKYLIRKKFNAYNLVIVDENTLLNKNERIDKETKSLLIAI
Ga0272429_100021223F100076N/AMHLDNAFIRYLCVVIFKLFLVIQIMRIFLKIENLDILTSFSIAWRVD
Ga0272429_100021228F010658N/AMINFNIINNFIIRAFVKREEYFIQKKSNTYNLVIVDKNSLLAKNEKINKETKLLSITI
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