NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000226

Scaffold Ga0272429_1000226


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000226 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139520
Total Scaffold Genes177 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)99 (55.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10002263F021896N/AVTKNNLESEDFLKNVECNLTFLKSDKEYIFFDETSERDSYSTIVIDESSIKVREI
Ga0272429_10002267F074204N/AMIVFCILRQAQSRVLALTLIDSEVFAYVFMNKFFAQQHHLFLHQLTHSRRLREFDDQVTLIDDIIHVVEITMILDEHIERLFFYVIELSQYFIVMNLS
Ga0272429_10002268F001951GAGMTMTKLRFIDSSRNEKERDEDTVETTVTEVMIFEFKELLINAETLLTLTNETMTKTKRD
Ga0272429_10002269F087980N/AMKSSHNFSIDDERAVEQFAQSVIENSVEIFRAMRELQNQVRQHDVIISFSFIVLSSSAYIELNSQFLATITQIVTQILNNQSSLIVHSSANSVAVIIASRFEKLLDISEYEKDKD
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