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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000238 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 132582 |
| Total Scaffold Genes | 122 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (27.05%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F003820 | Metagenome | 466 | Y |
| F008735 | Metagenome | 328 | Y |
| F023763 | Metagenome | 208 | Y |
| F055319 | Metagenome | 138 | Y |
| F064254 | Metagenome | 128 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000238101 | F023763 | N/A | MLRIECILLFKKIFXATCQSIQLIIDLVEMIIDAIVESKQKLTSMSLMMTQLLNXHEILKIFVIHDHFNKINKVFKFXSLFLESTNNDHEFFIVDLIVTLDXVMLLXKVSDXMKNLILIILKKNVFEHIVQSIDFYHNFMIXIIVTKNNLESEDFFKNVECNLTFLRSDKEYIFSDETSERDSYSTIVIDESSIKVCEI |
| Ga0272429_1000238103 | F055319 | N/A | VKRLKLVNKMICIQISEHDLVQRLNFSCKQXDFFIYIDNITVINIHNMQSEELFIXAFFSDFA |
| Ga0272429_100023822 | F008735 | N/A | VSFLIYDKSXLNIDDLDLMKEIMIIFHVHALYQTLLSCIQSIFVSFIFKYVEKLLEFRSDEDSDRVCKEINDEKRLIVQDLCNDLSYHCKKLRIQFYINXRIKNDEXRXSDNIMLLNLILKLLHYAKDLNXIFDHTLSELFSSTLIVDREIVKXLLXACSAFYXDVRSXSEPRLYQV |
| Ga0272429_100023828 | F003820 | N/A | MKLFSYFDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLLHLKKFLQDVNNKQRVNYQLRSERCTIIVKVIVVFDKRATSLSVMTLIINYVKSIIFSISESDRAKSSIICYICKISNHLFKNCFQNKINISTSQVFISRLHEIIISKNK |
| Ga0272429_100023844 | F064254 | N/A | MQELYESISLLFLLSFIXLFDDVTAXNXFSMLIENIIQMIVIIVLMVSKSFLKFVMFSSHYIAFHSTFHLKHVNKMCLINIQSLLHLHVIITISNTHLSYRNXLKSIFLMRSCINNALXDFAXFLCSCRCXCVISDVRYQKXVALNFFFQTILHVYLICFCMSISLIITSMH |
| Ga0272429_10002388 | F001951 | N/A | MMIITKFKFIDSLKNERKKDEDTIKIIITKVMIFELKELLVNAEMLLTLMNKTMMKMK |
| Ga0272429_10002389 | F089602 | N/A | MKNEXLNFIKISSEENNDLNEIINIVLQTINQXEIFHQKTFFLLIEEIVVVDKVIHVLLQSFAKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |