NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000239

Scaffold Ga0272429_1000239


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000239 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)132250
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (12.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015284Metagenome255Y
F100076Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100023911F015284N/ALFNYNILKINKDKSLLINKHELNAILRILRDNKKEFLVKKEKLQISIDKIDECIKEHYDKSL
Ga0272429_100023917F100076N/AMHLDNAFVCYLCVIIFKLFLVIQIMRIFFKIENLGILTSFSIA
Ga0272429_100023919F015284N/ALFNYSILKIDKNKLLLVNKYKLNTILKIFRNNKEKFLVEKKNSNIYDKIDKYIKKYYNKLLQEYLEIIKKI
Ga0272429_100023942F100076N/AMHLDNAFVCYLCVIIFKLFLVIQIMRIFLKIENLGILTSFSIAWRVDRVRLRNR
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