NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1000247

Scaffold Ga0272429_1000247


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000247 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130652
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (55.63%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021452Metagenome218Y
F025887Metagenome199Y
F061402Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10002472F025887N/AVTESDILIFCFISMSDDSFNFKSFTVDVILSSLEKIFKSLILINTEVTNMTFIDESLMLKLCECFDIQSISLSKSKSIQSYDETSD
Ga0272429_100024723F021452GAGMLISCFINMLDDSFDFKSFIVDVILNSLEKIFQFLALIDIEVTDMTFIDDSLVSELCERFDIQSISLFKLKSIRLYDEILDRRFITHALYISVTIQEHKNKMMSLLITRLDQHKIIIDNL
Ga0272429_100024729F061402N/AMTEFVDNNAISSSIEQLTFFLNKNFHSHMSFDSNSTEYEIIRARIEADKAENIFEHMK
Ga0272429_10002477F061402N/AMTEFVDNNAISSSIEQSAFFLNKNFHSCMSFDSNSTEYEITQARIEASKAKNIFKHMK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.