NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000248

Scaffold Ga0272429_1000248


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000248 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129873
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (51.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F048019Metagenome148Y
F102179Metagenome101Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000248124F102179N/AMFIHNVSENMNTCSAVHVRSMLLRVMTLAMQETHLDEVHFLKDRISQFKSTTSRSTNVEILTYKDHNVTKKQLNSVAETVNCKQLISHAIVKVLTIHKTTYNFSSKFVVELIKIL
Ga0272429_1000248127F048019N/AVNKHAFELFFAQAFVKALQDESTMYFLIMINVVEKSIIEYQVKVINNVMNHITNALKTQTLLIKLKEYEDVFLIKSINKLFLHEDHDHAIKITAKSLYELLYNLLNTELMTPR
Ga0272429_1000248138F001951N/AMMIMTKLRFIDSSRNEKERDEDIVKITVTEMTIFEFKELLVNAEMFLTLMNKMMMKTKQD
Ga0272429_1000248142F021896N/AMIKNNLESEDFLKNVECNLTFLKSDKKYIFFNETSERSNYSTIVIDESSIKVREI
Ga0272429_1000248150F102180N/ALTLVITHHNELKELVVKAKHLADVVTANQEYHEKIYKIYSDSQISLKAVKVMTSTKDQTRLQ
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