NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000272

Scaffold Ga0272429_1000272


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000272 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120754
Total Scaffold Genes132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (46.97%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F025887Metagenome199Y
F058565Metagenome134Y
F065269Metagenome127Y
F096306Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000272104F065269N/AMTRSTESESVSISRYDFQNVRKESLLSQNQAASEEEDMNASSNTEEKNMNTLFFDHEMIKISINTELNA
Ga0272429_1000272106F025887N/AMSDDSFDFKLFTVDVILSSLEKIFRSLALIDTEVTDMTFIDESLMSELCECFDIQSISLSKSKLIQSYDEISD
Ga0272429_1000272118F096306N/ALSSLCDIKAMFAMYDNHAVDSLIVDDDSNKERSCRDNSELHASMILFNIVTLIAINVKIVFVESNDK
Ga0272429_1000272124F021216N/AMFQMKSRIKSNATRRKHHELKKVLRNHEHSNDDHLNDTLNEHTESISSCDVIKELDERER
Ga0272429_1000272125F058565N/AMNCSNADSKMIASYVNSLQENKDVRLKHLHNDEENITNIIDLLIKISTLEKEKSKDHS
Ga0272429_100027298F021216N/AMFQMKSRMKSNAMRKEHYELEKALRNRERSDDNHLNDIINKHTESISSCDVIKESDDRER
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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