NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1000275

Scaffold Ga0272429_1000275


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000275 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119597
Total Scaffold Genes122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (50.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044226Metagenome154Y
F055319Metagenome138Y
F074204Metagenome119Y
F081945Metagenome113Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100027522F044226GAGMIKFSDNFNIFLITSMIFFYFNKEFHSRMSFDSDTTDYETTHERLKVRKANDIVI
Ga0272429_100027527F081945N/AMFSRSFTEEHFEEFRNHFFQISDADSTKSSSAVSFIHEDDESFTKTIILLMFYEI
Ga0272429_100027529F087980N/AMKLSYNLLINDERAVKQFTQSVIENSVEIFRVMHELQNQVQQHDVIISFLFIVFSSSIYIKLNSQFLAMITQIIAQILNNQSLFIIHLSANSVTVFITSRFKKPFDIFKYEKNKDQLNA
Ga0272429_100027532F055319AGCAGMIEVRVKRLRLVDKIICIQIFERNLAQNLNFSCKQQDFFIYIDDVTVVDVHDTQSEELLI
Ga0272429_100027533F074204N/AMIVFCILRQAQSRVLTLALIDSEVSAYVFMNKFFTQQHHFFLHQLIHSRRLREFNDQVALINDIIHVVEITMILDEHIEKLFFYVIELSQYLIIMNLL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.