NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1000284

Scaffold Ga0272429_1000284


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000284 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116702
Total Scaffold Genes130 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (55.38%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F074204Metagenome119Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100028488F102181GAGMIIVHVHALYQTLLSYIQSIFVSFILKYVKKLLKSRSNEDNDRICKRMNDEEILIVQDLYNDLSYHCKKLRIQFYID
Ga0272429_100028490F001951N/AMMIITKLKFINLLRNKRERDEDTVETTVTKMIIFELKELLVNTKIFLTLMNETMMKMK
Ga0272429_100028491F074204N/AMIVFYILRQAQSKVLTLALIDNEVSAYVFMNKFFTQQHHFFLHQLIHFCRLQEFDDQVTLINDITHVVEITIILDEYIEKLFFYVIKLSQYLIIMSLS
Ga0272429_100028495F021896N/AMMKNNLESEDFFKNVECNLTFLRSNKENIFSDEMSERNNYSTIVIDESFIEVCKI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.