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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000296 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 113198 |
| Total Scaffold Genes | 117 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (47.86%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F013598 | Metagenome | 269 | Y |
| F017767 | Metagenome | 238 | Y |
| F036036 | Metagenome | 170 | Y |
| F044226 | Metagenome | 154 | Y |
| F048017 | Metagenome | 148 | Y |
| F061401 | Metagenome | 131 | Y |
| F087980 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100029614 | F005901 | N/A | VISRLEDDAAEHIFARHRHDASHSYISIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLMNNLQNKINNRLQNNLSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCIVIIKVTVVSDKRVTSLSVTTSIIDYVKSTISSISESARSSIICYICKTLNHLFKNCSQLNKINTSASHAFTLRLHEIIISKNKKNKKMSFENSEAKN |
| Ga0272429_100029615 | F017767 | N/A | MKDVLISSTMSMSDDSFASESLTIECILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVC |
| Ga0272429_10002962 | F044226 | GAG | MMKFNDNFNIFSITSMILFYFNKEFHSRMSFDSDTTDYKTTCERLEARKADDIVI |
| Ga0272429_100029620 | F013598 | N/A | MNFIINLFDSSEYNAILMIICKLSKERHYISCIIDDKDVIVKKTAEMLIQ |
| Ga0272429_100029621 | F036036 | N/A | MLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDLIDLQAFASAFILNDVRVEAYTRMKDLVHEEESQEDD |
| Ga0272429_100029623 | F061401 | N/A | LNNDQRVIREIKNKIKRVDNLSKTIFHKATIVTQSVDHLKSDQLKSRDVILTSVKEADILVESCFICHKSDHSFKECLDRFTRINVVNNEYDCFDFDSNFN |
| Ga0272429_10002965 | F087980 | N/A | LINDERAVEQFAQSVIENSVEIFRVMQELQNQVQQHDVITSSSFIVFNSSVYIKLNSQSLAMIARIVAQILNNQSFFIVYFSANSVAVFIAFKFKKLSDIFEYERNKDQLNA |
| Ga0272429_100029689 | F061401 | N/A | LNNDQRVIREIKNKIKRVNDLSKTIFHRATVVIQSIDHSKSDQLKSHDAILTSVKEADILVESCFICHKSDHSSKECFDQSTRINAVNNEYDRFDFDSNFDSKN |
| Ga0272429_100029690 | F006206 | GAG | LCKLDEILLKENYFEKSFLIDTHLISQNRSFSLRSLIDSDSVIYTIIHSNLVDKVCKKLKIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLITDIDHHEVILSKL |
| Ga0272429_100029693 | F048017 | GAG | MKNKQLSRRQVNYLNILSKFNFQIIFRSDKMNTKVDALIRMSLANVSESAQRLEDRFQTILILDRVDVLFIESKANLYQRVQMINQTDELCSEYRQAINENKLKFHITKLKNCEILDDVLFRKDLL |
| Ga0272429_100029694 | F008668 | N/A | MTFFYFNKEFHLRMSFDSDTTDYETTRKRLEVRKADDIVIQMKELLNFDHQQLKKTKLIIEVQINKHRRDVIYEVDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |