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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000306 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 109585 |
| Total Scaffold Genes | 136 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (52.21%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F005901 | Metagenome | 386 | Y |
| F006206 | Metagenome | 378 | Y |
| F008668 | Metagenome | 329 | Y |
| F032102 | Metagenome | 180 | Y |
| F036036 | Metagenome | 170 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100030630 | F005901 | N/A | LIDELFEHLKEIYDELNKNRKCRREYNALRQADKSFNVFYFDFMKLFSYLEYDDCTLMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVPNKCATSLSVTTSIINYVKLTISSISESARSSIICYICKTLDHLFKNCSQLNKIDTSASRAFISRLHEIVISKNKENEKMSFENSEAKN |
| Ga0272429_100030631 | F000597 | N/A | MKDVLISSTTSRSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKLLTLIKAKLIQEFDDHYAKKLITHAIYLNLTVQDHTIDTASMLITQLNQHQMILEKT |
| Ga0272429_100030634 | F032102 | N/A | MKIADLKKNISESIYKQVLETNRIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL |
| Ga0272429_100030636 | F036036 | N/A | MLVSLIHHLFSCFDQSFTSEDQCLVHLFRYILDSINLQAFASAFILDDVRVEAHTRMKALVYEEEDQEDD |
| Ga0272429_100030656 | F008668 | GAG | MMKFNDNFNIFLITSMILFYFNKEFHSRMSFNSNITDYKTTCKRLEVRKANNIVIQMKELLNFDHQQLKKMKLIIEVQINKHRRNIIYEVND |
| Ga0272429_100030660 | F006206 | N/A | LKENYFEKSFLIDTHLIFQNQSFSLRLLIDSDSIVYTIIHFNLVNKVCEKLKIQSISLAKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLTVSMLIVDIDYHEVILSKL |
| Ga0272429_100030667 | F001951 | N/A | MIIIMKLKFIDSSKDEKERNEDTVKIIVTKMMIFELKELLVDAEMLLTLMNKIMMKTKQD |
| Ga0272429_100030669 | F102181 | N/A | MKEIMIIVHVHALYQTLFSCIQSIFVSFIFKYIKKLLKFRSDENNDKVHREINDEERLIVQDLCDNLNYHCKKLRIQFYIN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |