NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000308

Scaffold Ga0272429_1000308


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000308 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108355
Total Scaffold Genes147 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (55.78%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F006206Metagenome378Y
F021896Metagenome216Y
F044226Metagenome154Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000308101F021896N/AVTKNNFKSEDFFKNVECNLTFLKSNKEYIFSDEMNERDSYSTIVINESSIEVCKI
Ga0272429_1000308104F006206GAGLCKLDEILSKENYFEKLFLIDTHLISQNQSFNLRFLIDSDSVIYTIIHSNLVDKVCEKLKIQSISLTKEKLIRNYDEKISKKIITHKILLNLIIESHKKLTISMLIADIDHHEVILSKF
Ga0272429_1000308109F044226GAGMMKFSDNFNIFLITSMILFYFNKEFHSRMSFNSDMTDYETTHERLEARKADDIVIQMKELLNFNHQ
Ga0272429_1000308112F074204N/ALKLFEFNLTFKDNHMIVFCILRQAQSRIFALALIDSKVFAYVFMNKFFTQQHHFFLHQLIHSCRLQEFDDQVTLINNITHIIEITMILDKHIERLFFYVIELSQYFIIMSLL
Ga0272429_1000308113F001951GAGMMIMTKLKFIDSLRNEREKDEDTVETIVTEMMIFEFKELLVNAKMLLTLMNKMMMKMK
Ga0272429_1000308115F087980N/AMKSSHNFSIDDERVVEQFIQSIIENSVEIFRVMRKLQNQVRQHNVIISFSFIIFSSSIYIKLNSQFLVIITRIIAQILNNQSFLVIHFSANFVIVFITFKFEKLLDIFKYEKNKD
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