Scaffold Ga0272429

Basic Information
Taxon OID	3300031449 Open in IMG/M
Scaffold ID	Ga0272429_1000318 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031449 Open in IMG/M

Scaffold ID

Ga0272429_1000318 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	105824
Total Scaffold Genes	114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (17.54%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (7.14%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

105824

Total Scaffold Genes

114 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (17.54%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (7.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.7	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.7

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F019260	Metagenome	230	Y
F021026	Metagenome	220	Y
F023763	Metagenome	208	Y
F028367	Metagenome	191	Y
F033265	Metagenome	177	Y
F033266	Metagenome	177	Y
F038009	Metagenome	166	Y
F055318	Metagenome	138	Y
F071806	Metagenome	121	Y
F074203	Metagenome	119	Y
F087978	Metagenome	109	Y
F094625	Metagenome	105	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_1000318105	F033266	N/A	MFSHSFTEEHFKEFXNHFSQISDADSSKSRTKSLSAASLIHEDDELFVETIIFLMFYEIXKTQRLALDKETDQLYKLDKQQEDEIKELKTRLQAKENTSSDFIYSEHSRSQKIPDSSLFTDEKNFI
Ga0272429_100031830	F028367	N/A	LCNLNKILLKESYFKKFFLINALLISQNQSFSLQSLINSDFIIYTLIHTRLVNKLCKKLKIQSILLVKEKLIQDYDEKIFKKAITHKILSNLMIKSHKKLTVLMLITDIEHHEVILNKLXMNKNEILLNMXHDIIVFFDQLNISISIFSISFNSKHSSXSXSTLTSSTTFNKTFMMLKXSVLIAQKEFFSI
Ga0272429_100031836	F071806	N/A	MKFQSQIITLDSVQLHLFSIISAFFQILVFMNLEIEEFNVKNIKSQLNQDILNLDEDSADILTQTLXE
Ga0272429_100031837	F023763	N/A	MSRIKYILLFKEIFXATCQSIQLIINLVEMISNVIVKSRQKLTLMSLITTQLLNXHEILKIFVIYDHFNRINKVFKLXSSFLESANNDHTFFIVNFIVILNXIMLFRKVSDXMKNLIFIILRKNVFKHIVQSINFYHNLVILSRTEGXMKPEXNSNN
Ga0272429_100031840	F019260	N/A	MSQFENISNTLPSTSLASINKLITVAQFRTHVNNASEAXYTFLIELQTXFNDIIIQYINXISACQQEHEQTQIELKQFQANNETLSEMVQELKSMSRIDIKSEKYSNSELYIEERGNKLNQFIFELISKLKLNANRYSTLESRLLYEYSRLSRNAVAQALPRMTAQHDKLVTIEQLVVLLRQAFDDSDKQGIAQRFISALRMRNRTFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYHVTVQNLLKSKAVIHSVSVISTVFAYLVKYATLSTGSKATISSSRDFMNLSIINMKKRDSLILKKH
Ga0272429_100031841	F038009	N/A	MSSMIKASSFQLNYVKMYRRLIELICLRNNRSSKEERILTLDFXXVFLLNDLKNMTKSFLFQTRNKTEXDLFLVNELNISLLLVSEXRVILLLASKXETELLLTSKLRTELLLVSELKTELLLSSELRTKLLFASKLNAELLLVNNL
Ga0272429_100031842	F021026	N/A	MIVFCILRQAQSKVLTFALIDSEVSTYVFMNKFFAQQHHLLLHQLTHSRKLXEFDDQVTLIDDIIHVVEITRILDKHIKRLFFYVIELSQYLIIMNLSXLCHHVINVNFEHNILILSFFFCLDHCCQSLIKIYDLNQQEENFLLEVNKVTSLQSCFQFTYKKQLSL
Ga0272429_100031845	F094625	N/A	MKSSHNLLINDEHAVEQFTQSMIENSVKIFYAMQELQNQVXQHDVIISFIIFSSSIYIKLNSQFLVMIAQIITQILNNQSSFIIHLFANSVAVFIAFKFKKLLNISEYKRNKDQLNAKEQSLIQRMNMNDDHYFFHQVKIIYVES
Ga0272429_100031847	F002432	N/A	MISFYFNKSFHFXMSFNLNTTNYETIRERIEARKVNDIIMQMKELLSFDCQQLKKMKQIIEAQINKHRXNVIYEVNDRVXLFFKNIKTTRSCKDLKDKQLELYQIIVKAEIFYHLHLSISMKHLHLMFSLKLLRFYSDDSLSKQQSESFRLIIIKDNKY
Ga0272429_100031851	F074203	N/A	MSSHSSTEEHFEEFRNRFSQISDADSLKSRTKSSSAALFIHEDDELFAETIIFLVFYEIXKARSLVLDEETDQLYELDKQQEEEIKELKTRLQAKEITSSDFIYSERFRSQKISDSSLFTDEKNSTXKNLYXKFQNKLEINVDLFSNERVKLSYIHFRLFNDAAKIIQARCKRDCVNFYKISDDFLKELAQLFNDLNKKINFCKEYYNLIQEFMKFSKFYTQFQHLSFYLDYHKK
Ga0272429_100031854	F033265	GAG	MTSQLKKQFKSCYEIFINCMIYSVLSFQTETFNSYQLCERVFVSDXESQLIYSQFIILRLMINXNKLIKTLNVNLEFIAITCKMTELNEYLXXNSVTIQISSQLLQXFLSTSIKDFILEXVLIQIXLIIKQLMNVLKLEKSMILSFEXKSYXTSIINNXKKRSXSSKFKSRNINKTSHIK
Ga0272429_100031855	F087978	N/A	MFSSKLLQSYSENLLSEQHSESLRSITIKNDEHXKINDILNFKRYXDQIQYKVKXTDLDRNDKXYYVNKEKFNDSEKVLNEFHKLYLNKSR
Ga0272429_100031867	F055318	N/A	MLRDDEALCVDRMQSFRDRADFNNLNAHAISNLHADEKVK
Ga0272429_100031897	F002432	N/A	MXKSLCRRLRITASLFTVYHSEINDQLKQVNQDVERELRIYCNYMQDDXIKXIFMMKFSDNSNIFSITSMISFYFNKRFHSXMSFDSNTTDYKTTCEHLEVKKVNNIIIQMKELLNFNHQQLKKMKLIIEVQINKHRXDITYEVNDXVXLSFRNVKTTRLCKDLKDIQLNFYQITVKVSIFYHLHLSISIKHLHLMFSSKLLQSYSEDLLSKQHLKSFRSITIKDDEHXKINDMLNFRCYQDQIQYKVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272429_1000318

Overview

Ecosystem & Geography

Associated Families

Sequences