NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000336

Scaffold Ga0272429_1000336


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000336 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100755
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (54.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021896Metagenome216Y
F071806Metagenome121Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10003362F021896N/AMMKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMSERNNYSTIVIDESFIEVREI
Ga0272429_100033621F071806N/AMKLQSQIITLDSVQLHLFSIISALLQILVLMNLEIKEFDVENIKSQLNQDILNLDEDFADTFTQTL
Ga0272429_100033623F021896N/AVTKNNFESEDFLKNVECDLTFLKSDKEYIFSDETSEPNNYSTIVIDESFIEVCKI
Ga0272429_100033626F074204GAGLIDSEVSAYVFMNKFFAQQHHLLLHQLTHSCRLQEFDDQVALINDIIYVVEITIILNEHIERLFFYVTELSQYLIIMSLS
Ga0272429_100033628F087980N/AMKLFHNFSINDEHAVKQFAQSVIKNSVEIFRVMQELQNQVQQHDVIISFLFIVFSFSVYIKLNSQSLAMIIQIIAQILNNQSSLVIHSSANFVAVFIASKFKKLFNIFEYEKNKD
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