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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000348 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 98453 |
| Total Scaffold Genes | 115 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (33.04%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F013598 | Metagenome | 269 | Y |
| F017941 | Metagenome | 237 | Y |
| F019260 | Metagenome | 230 | Y |
| F038010 | Metagenome | 166 | N |
| F079402 | Metagenome | 115 | Y |
| F089602 | Metagenome | 108 | Y |
| F098340 | Metagenome | 103 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000348105 | F000597 | N/A | MKDVLISSTMSMSNDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKLLTLIKAKSIREFDDHYAKRLITHVIYSNLTIQDHTVDITFMLITQLKLLEISIERVI |
| Ga0272429_1000348109 | F013598 | N/A | MNFIINLFDSSEYNAILTIICRLSKERHYISCIINDENITVKKTAEMLI |
| Ga0272429_1000348110 | F017941 | N/A | MKIADLKKNISESIYKQIFETNEIDENCTLLREAIARDKTQYEDIKLKNC |
| Ga0272429_1000348111 | F019260 | N/A | MIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFELISKLELNANRYSTFESRLLYEYSRLSRNAVAQALSRMTAQHDKLVMIEQLVVLLRQVFDDSDKQEITQRFISALRMQNRIFIEYLFDFQQHIDAIKYDVVIRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRITVQNLFKSKAVIHFVSVTSTVFAYLVKYATFSTGSKATISSSRNFMNLSIVNMKKQDSLILEKHQHRMINHLCLYCDKSEHQTAICNSKLKIQLQVVSLFALAISIDNLAFNTSLVLRKV |
| Ga0272429_1000348112 | F038010 | N/A | MNNDHLVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHFLLCFSLSEICILQRFDDQSVVFNSITHYALVKL |
| Ga0272429_100034861 | F102181 | N/A | MKEIMIVVHVHVLYQTLLSCIQLIFISFILRYFKKLLESKSNEDSDRVCKKMNNKERLIIQDLYNDLSYYYKRLRIQFYIN |
| Ga0272429_100034862 | F089602 | N/A | LNFIKISSEENDDLSEIIDIALQTINQQEIFHQRTFFLLIEKIVIINKVIYVLLQSFTKI |
| Ga0272429_100034863 | F001951 | N/A | MMKFKFIDSLKDERERDEDTVKTTVTEMMIFELKKLLVNAEMFLTLMNETMTKMKQD |
| Ga0272429_100034891 | F079402 | N/A | MQNKLKMNKNHFSIEEMKIAYVKTRVSETMIKHIALKMKDMITNSFLEAEEILLIINKMYDDFN |
| Ga0272429_100034896 | F098340 | N/A | LKKKELINIIMIKVVAYRTLVKKKNVKIFTLIISEINKMLSSIKDSAKLNEIIFVMSLKKLKKKLSIVYHDFLNVFNREKTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |