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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000359 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 95311 |
| Total Scaffold Genes | 100 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (62.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F006206 | Metagenome | 378 | Y |
| F009580 | Metagenome | 315 | Y |
| F037508 | Metagenome | 167 | Y |
| F044226 | Metagenome | 154 | Y |
| F070712 | Metagenome | 122 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_1000359100 | F037508 | N/A | VIFRLEGDADQQIYAKRRVDASSLYQSLSELLKHLKGIYEDQNLIRKCRREYVALKQLNKLFSSFYSEFTRIFSFLNYDDVTLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQ |
| Ga0272429_100035983 | F070712 | GAG | MNDIKEKKFMIKIRKQVIFAEKRDSLNLYRKIEVIVDQLKSRDATLTSVKETDLQTESCFICHKSDHFSRECFDRTSRINALEDDEFD |
| Ga0272429_100035984 | F006206 | GAG | LCSQIEVLLKENYFEKSFLINASLISQSNSFSFRSLTDSNFVVYTLIHDKLVDKVCQKLEIQSILLAKEKLIREYDEKLVRKTITHKILLNLTIESHKKLTMSMLIADIEHHEAILSKL |
| Ga0272429_100035989 | F044226 | N/A | MIEFSENFNIFSIISMTSFYFNKNFHSRMSFDSDTTDYETIHEHLEARKADDIII |
| Ga0272429_100035993 | F089602 | N/A | LSFIKISSEKDNDLNEIINIALQTVNQQEIFHQRTFFLLIKKIVIVDKVIHVLLQSFAKI |
| Ga0272429_100035994 | F001951 | GAG | MMIMTKLKFIDSLRNKRERNEETVKTTVTKMMIFELKELLVNAKMFLTLMNETMTKIKQD |
| Ga0272429_100035995 | F009580 | N/A | MIEVKVKRLRLVNKMIYIQIFERDLAQRLNFSREQRDFFIYTDDIIVVNVHDMQSEELLIEAFFSNFAQMLQLAIVIQLSLVADFLDLRNNQSLILNDDNDKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |