NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000373

Scaffold Ga0272429_1000373


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000373 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93136
Total Scaffold Genes115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (58.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F071806Metagenome121Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100037310F001951N/AMMTMTKLRFIDSLRNEKERDEDTVEMTVTEVMIFELKELLVDAEMLLTLMNEMMMKMK
Ga0272429_10003733F071806N/AMKLQSQIIALNSVQLHLFSVISAFLQILALMNLEIKEFDVEDIKSQLDQDTLNLDEDSADILTQTL
Ga0272429_10003735F021896N/AMKNNLESEDFLKNVECNLTFLKSDKEYIFSDETCERDSYSTIVIDESFIKVREI
Ga0272429_10003738F074204N/AMIVFCILRQAQSRVFALALIDSEVSAYVFMNKFFAQQHHLFLHQLIHSHRLREFDDQVALIDDIIHVVEITMILDEHIERLFFYVTELSQYFIVMSLS
Ga0272429_10003739F055319AGCAGMIEVRMKRLRLVDKIICIQIFERDLAQKLNFSCEQQDFFIYTDDVTVVDIHDMQSEELLI
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