NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000377

Scaffold Ga0272429_1000377


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000377 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)92620
Total Scaffold Genes112 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (58.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025887Metagenome199Y
F061402Metagenome131Y
F065269Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000377105F065269N/AMTRSTESESVSIARYDFRNVRRESLLPQNQAASEEEDTNASSNTEEENMNALLFDHEMIKISINTELNA
Ga0272429_1000377106F025887N/AMSDDLFDFKSFTVDVILNSLEKIFRSFTLIDTEVTDMTFIDESLMSKLCERFDIQLISLSKSKLI
Ga0272429_1000377111F061402N/AMTEFVDNNAISSSIKQSAFFLNKSFHSRMSFDSNSTEYEITQARIEASKAKNICKHMK
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