NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000398

Scaffold Ga0272429_1000398


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000398 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89277
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (50.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F036035Metagenome170Y
F041516Metagenome159Y
F058565Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000398103F036035N/AMKDRTKDDAMQRKHHELEKVSRNHERDNSNYSNDTLDKHTESISDCDIIKDSDERKKE
Ga0272429_100039884F058565AGAAGMTMNCMNCSNADLKMIASNVDSSQENRDAKLKCLHNNEENITNIIDLLIKISTLEKKKSKDHS
Ga0272429_100039892F021216N/AMFQMKSRMKSNAMRREHHELEKALRNRERSNDNHSNDTLNEHIKSISSCDVIEESNERKK
Ga0272429_100039898F041516N/AMTQKAIHIHEAYNLSLRDHEIIHEKENLSDIEKMLHMSKESILVEDFNLHHFT
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