NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000424

Scaffold Ga0272429_1000424


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000424 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)84969
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F096306Metagenome104Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100042483F096306N/AMFAMYDNYAVNSLIVDDDSNKERSCRDNSELHTSMILFNIVTLIVTNVKIVFVESNNK
Ga0272429_100042487F102181N/AMKEVTIIVHVHALYQTLLSCIQSIFVSLILRYVEKLLESRSDEDSDRIRREVNDEERLIVQDLCNDLSYRRERLRIQIIYRLKN
Ga0272429_100042488F001951N/AMTMTKLKFIDSSRNERERDKDTVETTVTEVMIFELKELLVDAEMLLTLMNETMTKTKRD
Ga0272429_100042489F055319AGCAGMIEVRVKRLRLVDKMICIQISERDLAQRLNFSCEQRDFFIYTDDITVVDVHDMQSEELLI
Ga0272429_100042492F021896N/AVTKNNLESEDFLKSVECNLTFLRSDKEYIFSDETSERDSYSTIVIDESSIEVREI
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