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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000442 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 82937 |
| Total Scaffold Genes | 99 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (40.40%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F005901 | Metagenome | 386 | Y |
| F017941 | Metagenome | 237 | Y |
| F021452 | Metagenome | 218 | Y |
| F025887 | Metagenome | 199 | Y |
| F048019 | Metagenome | 148 | Y |
| F061402 | Metagenome | 131 | Y |
| F075494 | Metagenome | 118 | Y |
| F079402 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100044249 | F075494 | N/A | VINDVKKMFVHNVSERRYSAKHVKNRSQDEIYCTRVINEVEKMSVYSVSKNMSTCSAVHVRSMLLRIIILAMQETHLDEVHFSKDKISQLESTTSRSTDVETSTHTDRNVAEKQLNSVAETVDCKQLVLRAIVRVLTIHEMTYNFSSKFVVKLIKILQQEDEFAVRLKADETTSI |
| Ga0272429_100044251 | F048019 | N/A | VNEHAFKLFFAQAFAKALQDEFTVYAFVMINVVKESIVEHQVKAMNNVTSRITNAFETQTLLVELKEYENVFLIESADKLSLHEDHDHAIEITAESLYESLYNLLNTELAILRQYLNDVLAKE |
| Ga0272429_100044253 | F025887 | N/A | MSDDLFDFKSFTVDVTLSSLEKIFRFLALIDTEVTDMTFIDESLMSELCECFDIQSISLLKSKSIQLYDEISD |
| Ga0272429_100044258 | F061402 | N/A | MTEFVNNNAISSSIEQSAFFLNKSFHSRMSFDSNSTEYEIIRTKIKASKVKNIFEHMK |
| Ga0272429_100044265 | F079402 | N/A | MNKNHFSIEEMKIAYVKSRVSETTIKHIAFRMRDTITNSFLEAEEILSIINKMYDDLNRHHTNQRQFLKLYQNKIFFHEF |
| Ga0272429_100044266 | F021452 | N/A | MLDDSFDFKSFIVDVILNSLEKIFQSLALIDIEVTDMTFIDDSLISELCERFDIQSISLFKSKSIRSYDEILDRRFITHALYISVTIQEHKNEMMLLLITRLDQHKIIIDNL |
| Ga0272429_100044274 | F005901 | N/A | MNDKLIVNVDQFDDEIICIVYMMSRLEDDAVKHIFARRRFDFSNSFTSIYELFDYLKEIYNELNKNRKSRREYNALRQADKSFNVFYFDFMKLFSYLNYDDCTLMNDLQNEINNRLQNALSVCLENFTSLSRLKKFLQDVNNKQRVNYQLRSERCTVIVKVTVIPDKCTTLLSMMTSIINYVKSTIFSIFESARSSIICYICKILSHLFKNCSQLNKINISALQAFILRLHEIVISKNKENEKMSSFENSETKN |
| Ga0272429_100044275 | F000597 | GAG | VTFIKDAMKDVLISSTMSMSDDSFASESLIIKCVLSNNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKFLTLIKAKSIREFNDHYAKKLITHVIYSNLTVQDHMINIASMLITRL |
| Ga0272429_100044280 | F017941 | N/A | MKIADLKKNISESIYKQILEINEIDENCTLLREAIARDETQYEDIKLKNC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |