NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000460

Scaffold Ga0272429_1000460


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000460 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)80602
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (45.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F013598Metagenome269Y
F021896Metagenome216Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100046012F013598N/AMNFIINLSDSYDYNVILTVICRLSKKKHYISCIIDDEDITVEKTAEMLIQ
Ga0272429_100046017F021896N/AMMKNNLESEDFLKSVECNLTFLRSDKEYIFSDEMSERDSYFTIVINESFIEVRKI
Ga0272429_100046022F102181N/AMKEVMIVVHVYTLYQTLLSCIQSIFVSFILRYVEKLLETKSDEDSNRICKEMNDEERLIVQDLCNDLNYHCKKLRIQLYID
Ga0272429_10004607F000597GAGGVTFIKDAMKDVLISSTTSMLNDSFVSESLTIECILSSNEISYSLKLLIDIEAVDYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASMLITRLNQHQMILEKT
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