NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000485

Scaffold Ga0272429_1000485


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000485 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76473
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (26.98%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F058565Metagenome134Y
F071806Metagenome121Y
F074204Metagenome119Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10004851F021896N/AIVMKNNFESEDFLKNVECNLIFLKSDKEYIFSDEMNERDNYSNIVIDESFIEVHKI
Ga0272429_10004854F074204N/AMIVFCILHQAQFRVLILALIDSEVSAYVFMNKFFTQQHHLFLYQLTHSCKLQEFDDQVALINDIIHVIEITMILNEYIKKLFFYVIELNQYFIIMNLS
Ga0272429_10004855F001951N/AMIMMKLKFIDSSRNERERNEDIVKTTVTKMMIFELKELLVNAEMLLTLMNKMMMKMKQD
Ga0272429_100048553F058565N/AMNCMNCSNADSKMIASNIDLLQENRDAKLKHLCNDEKNVVNIIDLLIKMSTLKKEKSKDH
Ga0272429_100048563F071806N/AMKFQSQIIALDSVQLHLFSVISTSLQILALMNLEIEEFNVEDIKSQLDQDTLNLDEDSADIFTQTL
Ga0272429_10004857F102181N/AMKEIIIIVHVHALYQILLSCIQSIFFSLKFRYIEKLFEFRSDEDSDRIHKKMNDKKRLIVQDLCDDLSYHRKRLRIQLYID
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