NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000486

Scaffold Ga0272429_1000486


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000486 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76302
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (45.19%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F013598Metagenome269Y
F017941Metagenome237Y
F021216Metagenome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_1000486102F021216N/AMFQMKSRMKSNAMKREHHELKKVLRNHECSNDDHSNDTLNEHTESILSCDIIKKSDERER
Ga0272429_100048688F013598N/AMNFIINLFDSSEYNAILMIICRLSKERHYISCIIDDENITVKKTAEMLIQ
Ga0272429_100048690F017941N/AMKIVDLKKNISESIYKQILETNEIDKNCMLLREAIARDETQYEDIKLKNC
Ga0272429_100048694F000597N/AMSDDSFASESLTTKCVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVYDQLQIEFLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDIVSMLITQLDQHQMILEKT
Ga0272429_100048695F005901N/ALINELFEHLKEIYDELNKNRKCCRKYNALRQADKSFNVFYFNFMKLFSYLKYDYHTLMNNLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQQVNYQLRSECYTVIIKVTVVPDKRATFLSVTTLIIDYVKSTIFSISESVRSSIICYICKTLDHLFKNCSQLNKIDTSASCAFISYLHEIIILKNKENEKMSFKNSETKN
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