NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000493

Scaffold Ga0272429_1000493


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000493 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75559
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (27.06%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F066295Metagenome126Y
F080690Metagenome114Y
F086377Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100049322F080690N/AMKSFYNLLINDERAVEQFTQSIIENSVKIFRVMQKLQNQVRQHDVITSSSFIIFSSSIYIKLNSQSLVIITQIIAQILNNQSSFIINFSANFVAVFITFRFKKLLDIFEYEKNKDRLNAXEQSLIQHMNMNDDHYLFHQVKIIYIKSRLIINKKIHNLMNQYRVNDLCIIFIFADXXHKLHHCCNNSFKTEDVHLYFREILKQNMNSFVDYYNLFYQKKECSLMKNFSLIDCLKRNVNYFIQVIIFFXXNLDET
Ga0272429_100049330F066295AGAAGLKTRLQAKEITSSDFIYSERSRSQKISDSLLFTDEKNSTXKNXYEKIQNKLEINVDLFSNEXVKLSYIHSRLFNDAVKITQARRERDCVNLYRIVDDLLKELAQLFNDSNKKVNFRREYYNLIQEFKKFSEFYTQFQRLSFYLDYHKK
Ga0272429_100049332F086377N/AMIQRFXDQRQRISILDCDSVQISIVYAEAKFFFKFLDEENRSNHLKVTDSNEIFTQILIQIMTKF
Ga0272429_10004934F005901N/ALNSFTSIYELFDHLKEIYNELNKNRKSRREYHALRQADKSFNIFYFDFIKLFNYLDYDDCTLMNNLQNKINNRLQNALSICSENFTSLSRLKKFLQDVNNKQXVNYQLRSERCTVIVKVTVVSDKRATLLSAVMTSIINYVRLIISFISESAKSSIICYICKISSHLFKNCSQNKIDISTSQAFISRLHEIVISKNKENEKMSFENSEAKN
Ga0272429_10004935F000597N/AMKDVLISSTMNMSNDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLITHVIYLNLTVQDHTINTAFMLITRLNQHQMILEKT
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