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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000575 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 65405 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (23.61%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008735 | Metagenome | 328 | Y |
| F035571 | Metagenome | 171 | Y |
| F038008 | Metagenome | 166 | Y |
| F041516 | Metagenome | 159 | Y |
| F086375 | Metagenome | 110 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100057524 | F038008 | N/A | MKMKXSYFYMMILXSKSSRVIIVANKKILMNQHHFNTFALKQKVYLNDNNNRENVMMIAMRINXKLNKRLRELILIITHHEELKELIVRAKHLADVMTENQEYYEKIYKVYSDSQTSLKTVKVMILTKDQTRLQXVQIMHKSIQFQEVTLKLH |
| Ga0272429_100057529 | F041516 | N/A | MLQTLTNNTQMIQKVIHIHEAYNLSLKNHEVIHEKESLSDIEKMLHMSKECVLVENFNLHHLTXEKSFYSR |
| Ga0272429_100057533 | F086375 | N/A | MFTLFVNSKSITSRNRDENXFNEIKEHYKRQNNDRVIIFKRLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNAS |
| Ga0272429_100057544 | F096307 | N/A | MLYIVVTQIDASLKENVLKHKKDVGSKDVCDIKKCVCHRHLLTTRNTKKCVCLEDNKSXLEDAKKEKRCXVISESNLSQI |
| Ga0272429_100057545 | F035571 | N/A | MYVSVFKVSMFTLLNISATXCKVXFXSVSSLHSLLNSSFFLSRXCQTDALNAISDLITAEYTCLTFVKIALHMKTSRXLSISILVTXFVFICXRYAFYCSFVFSYTSRTHTSDFNLITKFFICMLVIMLNLFDFLVKCVSSYFSDANVASXV |
| Ga0272429_10005758 | F008735 | N/A | MKEIMIIVHLHALYQTLLSCIQSILVLLIFKYVEKLLEFRSNEDSDKVCKTMNNKKRLIVQDLCNDLSYHCKRLRIQLYINXRTENNEQRXNDNIMLSNLILKLMHYAKDLNXIFDHTLSELFNSTLIIDQKIVRXLYLSERIIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |