NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000675

Scaffold Ga0272429_1000675


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000675 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56830
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (23.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021216Metagenome219Y
F024448Metagenome205Y
F038008Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100067516F021216N/AMKSNAMRRKHHELERAFRIHERSNDDHLNDTLNEYTESISSCDIIKELDEREEK
Ga0272429_100067518F038008N/AMSINQHYFDTFTLKQRVYLNNSDNRKNVTMIAMKINXELDKRLRESTLIITHHEELKELIAKMKHLADVVTENQEYREKIYKVYRDSQTSLKTVKVMISTKNQTRLXXVQTAHESI
Ga0272429_100067540F024448N/AMMKNVLISSMMSMSDDSFTSESLTIKCILSGNEISYSLKSLIDTEAADYSFIDEVIAQIVCDQLQIEFLTLIKAKLIQEFNDYYAKKLITHVIYLNLMIQDHTVNIAFMLITKLKQHQMILEKTXMNKINLIIDMQIDVLQFSNFNSCLTVLFLSEKTMIKQKSLTFIYILKKFFSSVIT
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