NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000795

Scaffold Ga0272429_1000795


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000795 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49498
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F008668Metagenome329Y
F028368Metagenome191Y
F048018Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100079525F028368GAGLCKLDEILSKENYFEKSFLIDTHLISQNQSFSLRFLIDSDSVIYTIIHSNLVNKVCKKLKIQSISLIKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMRNDIIVFSNQLNTSISIFLISFNSKHSSXSRSTSSFSITQTKIFMMLKXFIRKESFLIQSINAASFKTLLNHSKKNKIKVFALFMMNINREITYNTQCDLNALNVSSINETT
Ga0272429_100079526F004755GAGLSYIHSRLFNDAAEIIQARRERDCVNLYKIIKDILKELAQLFDDSNKKVNFRREYYNLIQEFKKFNEFYTQFQHLSFYLDYYEKQLITDLKDKIHLHLRFIXVDQLVQSNSLKEIRFYLIHLNNDQRVIREIKNKIKRVDDFSKTIFHKVTIVTQSVDHLKSDQLKSRDAILTSVKEADILVESCFICHKSDHSFKECFNRFTRINAVNNEYDRFDFDSNFDSKN
Ga0272429_100079538F048018GAGMIXRYSLFELSTYFLSXKYKXFSCSLHSTKEILLXCHASLXSASIIXAANLSLISTCFYNVXVKMSAESSSRFRMSXFSXNLIFLTLNSLISKFMKIKIYKDAEIIKNRCNXTESKVMICDXSFMTLMLKMLKMRFSTILKSKTXIFRIVXCXYXCQELNVFFSLKKFSEQCVKAFNLSSILLKX
Ga0272429_10007954F028368N/ALKENYFEKSFLIDAYLISQNXSFSLHSLIDSDSVIYMIIHFNLVDKVCKKLKIQSILLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLIISMLIADIDHHEVILSKLXMNKNEILLNMXNNIIVFSNQLNTSISIFSILFNSKHLNXSXSTSSSSITKIKIFMMLKXFIREESFLIQSIDAASFKTLLNCLKKNKIKVFALFMMNINRKITYNTQCDLNALNVFSINEMTQNLKDIKAKLSSKYHEFLNVFD
Ga0272429_10007957F008668N/AMIFFYFNKEFHSQISFNSNTTDYETTCERLEARKADDIVIQIKELLNFNHQQLKKTKLIIEIQINKHKXDVIYEVNDXV
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