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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031449 Open in IMG/M |
| Scaffold ID | Ga0272429_1000800 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 49103 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (17.07%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008169 | Metagenome | 337 | Y |
| F009580 | Metagenome | 315 | Y |
| F035571 | Metagenome | 171 | Y |
| F039410 | Metagenome | 163 | Y |
| F058565 | Metagenome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272429_100080013 | F058565 | N/A | MNCSDADSKMIASDINSLQENKDAKLKHSCNDEENVINIIDLLIKISTLEKEKSKDHS |
| Ga0272429_100080036 | F001951 | N/A | MTMTKFRFIDSSRNEKERNEDTVKTTVTEVMVFELKELLINAEMLLTLMNEMMMKMK |
| Ga0272429_100080037 | F009580 | GAG | MICIQISEHDLAQRLNFSHRQQDFFIYIDDIIIVNVHDMQSEELLIXAFFSDFAXMLQFAIVAQLSLIADFLDFRNNQNLILNDDNDEV |
| Ga0272429_100080040 | F008169 | N/A | MSSHSLTEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETIILFVFYEIXKTXSLALNEETDXLYELNKQQEDEIKELKIKLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAEITQARRERDCVNLYRIVDDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIADLKDKIHSRLQFVXVDQLVQSDFLKEIRFYLIHLNNDQRVIREIKDKIKRVNDFSKTIFHRATVVTQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSGHSFKECLDXSTRINAVNNEYDRFDFDSNFDSKN |
| Ga0272429_100080041 | F039410 | N/A | SXYFDDSFALISFKFXVVSSIEETFRAFKSHXVLYAISLLMFVMNRAKTSILFLFEXFNSVLNEAASMLXIKNDSFRINRLSIIKILVXMIEENKDDRDQLECFELKKIEKIEIEVFNXFEKTMTSFHIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLLMMRLSRILXVMIFLNIFSS |
| Ga0272429_10008006 | F035571 | GAG | MYVSVFKVSMLTLLNASATXHRVXFXSVSNLHSLFDSSSFLSRXCQTDASNAISDLTTAEYIYLAFVKIASHVKTLKRLSVSILVTXFIFICXRCAFHHSFMFSCIFKIHTSDFNLITEFSIYMLIIMLNLFNFLVKCINSYFSDANVTSXVQAHFAQTSYALLSVLQISSVNLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |