Scaffold Ga0272429

Basic Information
Taxon OID	3300031449 Open in IMG/M
Scaffold ID	Ga0272429_1000829 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031449 Open in IMG/M

Scaffold ID

Ga0272429_1000829 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47739
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (54.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

47739

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (54.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.7	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.7

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F038010	Metagenome	166	N
F055319	Metagenome	138	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272429_100082948	F087980	N/A	MKSSYNFSIDNERAVEQFAQSMIENSVEIFRAMQELQNQVQQHDVIISFLFIIFSSSIYIKLNSQFLVMIAQIITQILNNQSLLIIHLSANSVAVFITSRFKKLLDIFKYEKNKD
Ga0272429_100082950	F001951	GAG	MTMTKLKFIDSLRNERERDEDIVKITVTKMMIFKFKELLIDAKMLLTLINKMMMKTKQD
Ga0272429_100082951	F055319	AGCAG	MIEVRMKRLKLVNKMIYIQISERDLVQRLNFSCKQRDFFIYIDDIIVVDIHDMQSEKLLI
Ga0272429_100082954	F021896	N/A	MKNNLESEDFLKSVECNLTFLRSDKEYIFSDETSERDSYSTIVIDEFSIEVREI
Ga0272429_100082957	F019260	N/A	MIQELKSMSRINIKSEKYSNSELYIEERENKLNQFIFKLISKLKLNANRYSTLESRLLYEYSRLSKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMQNRIFIEYLFDFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSRYRVTVQNLFKSKAVIHSVSVISTVLAYLVKYATFSTGSKATISNSKNLMNLSIVNMKKRDSLILKKHQHRMINHLCLYCDKSKHQTAICNSKLKIQLRVISLFVLAISIDNLAFDTSLALRKV
Ga0272429_100082958	F038010	N/A	MNNDHFVLSDNLESNKINVNLSVLIDIDVIDYAFIDDSFAQRHSLLCFSLSEICILQRFDDQSVVFNSITHYALVKLRVSSEKLEETLFYVTQLSQFSVVLDLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272429_1000829

Overview

Ecosystem & Geography

Associated Families

Sequences