NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000850

Scaffold Ga0272429_1000850


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000850 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46333
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (26.42%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057012Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100085051F057012AGAAGMXLSXISSDAXNRSEFEKRSVFVKVVIESDMLISCFINMLDDSFDFKSFIVNIILNSLKKIFRFFALINIEVTNMTFIDDSLISELCECFDIQSISLFKSKLIYSYDKTLDRRFITYALYISVTIQEHKNEMMSLLITRLDQHKIIIDNLXLKRNQILIDFANDRLISSSNIRISKLIILKASSQSAFHRLESSEICKMKRKNLKSMSTIILKRTTNSKSVNQFIESAFIXKQSTQVDLDQHELI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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