NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1000989

Scaffold Ga0272429_1000989


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1000989 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40852
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (14.63%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F038008Metagenome166Y
F064254Metagenome128Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100098925F008735N/AVSLLIYDESXLNIDNFDLMREVMIIVHVHALYQTLLSCIQSIFVSLILRYVKKLLESRSNEDSNRICKKMNDKRRLIVQDLCNDLSYHDKRLRIQFYIDXTTKNDEXRXNNNIMLLNLILKLLHYAKDLNXIFNHTLSKLFNSTLIVDQEIVR
Ga0272429_100098931F094622N/AMSIKQHNLDTFALKQRVYSNDNDSKDDVTVIAMRMNXELDKRLRKSTLVITHHDELKELVAKMKHLADVATANQECHEKIYKIYSDSQIFLKTVKVMTSTKNQTRLXQVQTAHKNIXS
Ga0272429_100098932F064254N/AMRELYELVSSLLLLSFIXLFDDVTVVYXFSMLVENIIXMIAVITLMIFRSFLKFMMFSLHCIVFRSIFHLEHVNRMCLIDIXSLLHSHVVVVISSTHLSYRNXLKLIFLVRNCVNNTLXDFAXSLCRCRCXXVIFDVKYQKXVALNLFLQTTLHVYLICFCMSVNYVVISVRXCSISDRDNLYASSVILSAALFSSTSAYFVT
Ga0272429_100098936F038008N/AMSISQHHLNTFMLKQRVYLNDSNSKENVTMTAMRINXELNKRLRKSTLVITHHEELKELIAKVKHFANIATENRKYHEKIYKVYSDSQTSLKTVKVMISTKDQTRLQRVQIAYESI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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