NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1001020

Scaffold Ga0272429_1001020


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1001020 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39902
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (10.20%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales → Aspergillaceae → Aspergillus → Aspergillus ruber → Aspergillus ruber CBS 135680(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038008Metagenome166Y
F041516Metagenome159Y
F064254Metagenome128Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100102012F038008N/AMKXSYFYMMIFXSKSSRIVIVANKKMSINQHHFNTFALKQKVYLNDSDSKENVTITAIRINXKLNKRLKESTLIITHHEELKELIARMKHFTDVVTKNQEYHEKIYKVYSDS
Ga0272429_100102022F064254N/AMQELYESVSSLFSFSFIXFFNDITVXNXFNIFIESIIXMIIITALTISKSFFKFVMFSSCCIAFYSTFHLRHVNKTCLINIXFLLHLHIIIVTSSTHLSCKNXLKSIFLVRSCINNALXDFAXLLCSCRCRCIIFDVKYXKXAALNFSFQTILHVYLIYFCISISLVITSVRXCSVSNKDKSCASSVILFITSFSSTSVYFITQCSFSMTS
Ga0272429_100102023F038008N/AMKMKXSHLYMMILXSESSKVVIVANKKMSISQYYLDIFTLKQKVYSNDSDSRENVTMIAIQINXELNKRLRRSILIITHHEELKELIAKMKHLADVVTENQECHKKIYKVYSDNQTFSKTVKVMISTKDQTCLQXVQIAHESIQF
Ga0272429_100102026F041516N/AMTQKAIHIHEAYNLSLRDREVIHEKESLSDIEKMLHMLKECVLVEDFNLHHLT
Ga0272429_100102045F104134N/AMLSLLNLRSDMIRFLXSINMFAIFCRICSINFFCISFIFLLFIILIMTFHLLQSNDRSSLNHYFLVAISSLVMFTHDVIFVERCILLYVCNCLLSSXTDIFSFCTLFAMNAFXFPXCFSSESSXKHXISFNAIFFHEXSLFFSFSNVDIFINKSIMLVMFFSLLHKHFNFASLFLCNKSTLLAIIFESALLQFVQFIII
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